Publications

Publications supported in part by NIH Grant R01-NS-074980

Journal Papers

  1. Phillips OR, Joshi SH, Squitieri F, Sanchez-Castaneda C, Narr K, Shattuck DW, Caltagirone C, Sabatini U, Di Paola M (2016) Major Superficial White Matter Abnormalities in Huntington disease Frontiers in Neuroscience, 10(0197) doi: 10.3389/fnins.2016.00197 PubMed PMID: 27242403
  2. Wang ZI, Krishnan B, Shattuck DW, Leahy RM, Moosa ANV, Wyllie E, Burgess RC, Al-Sharif NB, Joshi AA, Alexopoulos AV, Mosher JC, Udayasankar U, the Pediatric Imaging Neurocognition and Genetics Study, Jones SE (2016) Automated MRI Volumetric Analysis in Epilepsy Patients with Rasmussen’s Syndrome, American Journal of Neuroradiology, 2016 Sep 8. doi: 10.3174/ajnr.A4914 PubMed PMID: 27609620
  3. Bhushan C, Chong M, Choi S, Joshi AA, Haldar JP, Damasio H, Leahy RM (2016) Temporal Non-Local Means Filtering Reveals Real-Time Whole-Brain Cortical Interactions in Resting fMRI. PLoS One. 11(7):e0158504. doi: 10.1371/journal.pone.0158504 PMID: 27391481.
  4. Phillips OR, Joshi SH, Piras F, Orfei MD, Iorio M, Narr KL, Shattuck DW, Caltagirone C, Spalletta G, Di Paola M. The superficial white matter in Alzheimer’s disease. Hum Brain Mapp. 2016 Jan 23. doi: 10.1002/hbm.23105. PubMed PMID: 26801955.
  5. Kim JH, Song SK, Haldar JP. Signal-to-noise ratio-enhancing joint reconstruction for improved diffusion imaging of mouse spinal cord white matter injury. Magn Reson Med. 2016 Feb;75(2):852-8. doi: 10.1002/mrm.25691 PubMed PMID: 25824472.
  6. Varadarajan D, Haldar JP. A Majorize-Minimize Framework for Rician and Non-Central Chi MR Images. IEEE Trans Med Imaging. 2015;34(10):2191-202. doi: 10.1109/TMI.2015.2427157. PubMed PMID: 25935028; PMCID: PMC4596756.
  7. Marusak HA, Kuruvadi N, Vila AM, Shattuck DW, Joshi SH, Joshi AA, Jella PK, Thomason ME. Interactive effects of BDNF Val66Met genotype and trauma on limbic brain anatomy in childhood. Eur Child Adolesc Psychiatry. 2015. doi: 10.1007/s00787-015-0759-4. PubMed PMID: 26286685; PMCID: In Process.
  8. Marusak HA, Furman DJ, Kuruvadi N, Shattuck DW, Joshi SH, Joshi AA, Etkin A, Thomason ME. Amygdala responses to salient social cues vary with oxytocin receptor genotype in youth. Neuropsychologia. 2015;79(Pt A):1-9. doi: 10.1016/j.neuropsychologia.2015.10.015. PubMed PMID: 26477647; PMCID: In Process.
  9. Joshi AA, Leahy R, Badawi R, Chaudhari A. Registration-based Bone Morphometry for Shape Analysis of the Bones of the Human Wrist. IEEE Trans Med Imaging. 2015. doi: 10.1109/TMI.2015.2476817. PubMed PMID: 26353369; PMCID: In Process.
  10. Bhushan C, Haldar JP, Choi S, Joshi AA, Shattuck DW, Leahy RM. Co-registration and distortion correction of diffusion and anatomical images based on inverse contrast normalization. Neuroimage. 2015 Jul 15;115:269-80. doi: 10.1016/j.neuroimage.2015.03.050. PMID: 25827811
  11. Wang ZI, Jones SE, Jaisani Z, Najm IM, Prayson RA, Burgess RC, Krishnan B, Ristic A, Wong CH, Bingaman W, Gonzalez-Martinez JA, Alexopoulos AV. Voxel-based morphometric magnetic resonance imaging (MRI) postprocessing in MRI-negative epilepsies. Ann Neurol. 2015;77(6):1060-75. doi: 10.1002/ana.24407. PubMed PMID: 25807928; PMCID: PMC4447617.
  12. Kim JH, Song SK, Haldar JP. Signal-to-noise ratio-enhancing joint reconstruction for improved diffusion imaging of mouse spinal cord white matter injury. Magn Reson Med. 2015. doi: 10.1002/mrm.25691. PubMed PMID: 25824472; PMCID: PMC4589425.
  13. Haldar JP, Zhuo J. P-LORAKS: Low-rank modeling of local k-space neighborhoods with parallel imaging data. Magn Reson Med. 2015. doi: 10.1002/mrm.25717. PubMed PMID: 25952136; PMCID: PMC4637005.
  14. Degnan AJ, Wisnowski JL, Choi S, Ceschin R, Bhushan C, Leahy RM, Corby P, Schmithorst VJ, Panigrahy A. Altered Structural and Functional Connectivity in Late Preterm Preadolescence: An Anatomic Seed-Based Study of Resting State Networks Related to the Posteromedial and Lateral Parietal Cortex. PLoS One. 2015;10(6):e0130686. doi: 10.1371/journal.pone.0130686. PubMed PMID: 26098888; PMCID: PMC4476681.
  15. Wang ZI, Alexopoulos AV, Jones SE, Najm IM, Ristic A, Wong C, Prayson R, Schneider F, Kakisaka Y, Wang S, Bingaman W, Gonzalez-Martinez JA, Burgess RC. Linking MRI postprocessing with magnetic source imaging in MRI-negative epilepsy. Ann Neurol. 2014;75(5):759-70. doi: 10.1002/ana.24169. PubMed PMID: 24777960; PMCID: PMC4346132.
  16. Kakisaka Y, Jehi L, Alkawadri R, Wang ZI, Enatsu R, Mosher JC, Dubarry AS, Alexopoulos AV, Burgess RC. Cephalic aura after frontal lobe resection. J Clin Neurosci. 2014;21(8):1450-2. doi: 10.1016/j.jocn.2013.11.024. PubMed PMID: 24613491; PMCID: PMC4340243.
  17. Haldar JP. Low-rank modeling of local k-space neighborhoods (LORAKS) for constrained MRI. IEEE Trans Med Imaging. 2014;33(3):668-81. doi: 10.1109/TMI.2013.2293974. PubMed PMID: 24595341; PMCID: PMC4122573.
  18. Habibi A, Ilari B, Crimi K, Metke M, Kaplan JT, Joshi AA, Leahy RM, Shattuck DW, Choi SY, Haldar JP, Ficek B, Damasio A, Damasio H. An equal start: absence of group differences in cognitive, social, and neural measures prior to music or sports training in children. Front Hum Neurosci. 2014;8:690. doi: 10.3389/fnhum.2014.00690. PubMed PMID: 25249961; PMCID: PMC4158792.
  19. Chaudhari AJ, Leahy RM, Wise BL, Lane NE, Badawi RD, Joshi AA. Global point signature for shape analysis of carpal bones. Phys Med Biol. 2014;59(4):961-73. doi: 10.1088/0031-9155/59/4/961. PubMed PMID: 24503490; PMCID: PMC3966902.
  20. Bhushan C, Joshi AA, Leahy RM, Haldar JP. Improved B0 -distortion correction in diffusion MRI using interlaced q-space sampling and constrained reconstruction. Magn Reson Med. 2014;72(5):1218-32. doi: 10.1002/mrm.25026. PubMed PMID: 24464424; PMCID: PMC4017008.
  21. Wang ZI, Ristic AJ, Wong CH, Jones SE, Najm IM, Schneider F, Wang S, Gonzalez-Martinez JA, Bingaman W, Alexopoulos AV. Neuroimaging characteristics of MRI-negative orbitofrontal epilepsy with focus on voxel-based morphometric MRI postprocessing. Epilepsia. 2013;54(12):2195-203. doi: 10.1111/epi.12390. PubMed PMID: 24116733; PMCID: PMC3982614.
  22. Wang ZI, Alexopoulos AV, Nair D, Krishnan B, Mosher JC, Burgess RC, Kakisaka Y. Feasibility of magnetoencephalography recording in an epilepsy patient with implanted responsive cortical stimulation device. Clin Neurophysiol. 2013;124(8):1705-6. doi: 10.1016/j.clinph.2013.01.019. PubMed PMID: 23474057; PMCID: PMC4349520.
  23. Kakisaka Y, Wang ZI, Enatsu R, Dubarry AS, Mosher JC, Alexopoulos AV, Burgess RC. Magnetoencephalography correlate of EEG POSTS (positive occipital sharp transients of sleep). J Clin Neurophysiol. 2013;30(3):235-7. doi: 10.1097/WNP.0b013e31827681a3. PubMed PMID: 23733086; PMCID: PMC3992251.
  24. Kakisaka Y, Mosher JC, Wang ZI, Jin K, Dubarry AS, Alexopoulos AV, Burgess RC. Utility of temporally-extended signal space separation algorithm for magnetic noise from vagal nerve stimulators. Clin Neurophysiol. 2013;124(7):1277-82. doi: 10.1016/j.clinph.2012.03.082. PubMed PMID: 22727713; PMCID: PMC3980452.
  25. Kakisaka Y, Gupta A, Enatsu R, Wang ZI, Alexopoulos AV, Mosher JC, Dubarry AS, Hino-Fukuyo N, Burgess RC. Magnetoencephalography reveals a unique neurophysiological profile of focal-onset epileptic spasms. Tohoku J Exp Med. 2013;229(2):147-51. PubMed PMID: 23343709; PMCID: PMC3904381.
  26. Kakisaka Y, Alkawadri R, Wang ZI, Enatsu R, Mosher JC, Dubarry AS, Alexopoulos AV, Burgess RC. Sensitivity of scalp 10-20 EEG and magnetoencephalography. Epileptic Disord. 2013;15(1):27-31. doi: 10.1684/epd.2013.0554. PubMed PMID: 23531601; PMCID: PMC3988277.
  27. Haldar JP, Wedeen VJ, Nezamzadeh M, Dai G, Weiner MW, Schuff N, Liang ZP. Improved diffusion imaging through SNR-enhancing joint reconstruction. Magn Reson Med. 2013;69(1):277-89. doi: 10.1002/mrm.24229. PubMed PMID: 22392528; PMCID: PMC3407310.
  28. Haldar JP, Leahy RM. Linear transforms for Fourier data on the sphere: application to high angular resolution diffusion MRI of the brain. Neuroimage. 2013;71:233-47. doi: 10.1016/j.neuroimage.2013.01.022. PubMed PMID: 23353603; PMCID: PMC3594568.
  29. Wang ZI, Jones SE, Ristic AJ, Wong C, Kakisaka Y, Jin K, Schneider F, Gonzalez-Martinez JA, Mosher JC, Nair D, Burgess RC, Najm IM, Alexopoulos AV. Voxel-based morphometric MRI post-processing in MRI-negative focal cortical dysplasia followed by simultaneously recorded MEG and stereo-EEG. Epilepsy Res. 2012;100(1-2):188-93. doi: 10.1016/j.eplepsyres.2012.02.011. PubMed PMID: 22391138; PMCID: PMC3361571.
  30. Wang ZI, Jin K, Kakisaka Y, Burgess RC, Gonzalez-Martinez JA, Wang S, Ito S, Mosher JC, Hantus S, Alexopoulos AV. Interconnections in superior temporal cortex revealed by musicogenic seizure propagation. J Neurol. 2012;259(10):2251-4. doi: 10.1007/s00415-012-6556-9. PubMed PMID: 23010942; PMCID: PMC3632445.
  31. Kakisaka Y, Wang ZI, Mosher JC, Dubarry AS, Alexopoulos AV, Enatsu R, Kotagal P, Burgess RC. Clinical evidence for the utility of movement compensation algorithm in magnetoencephalography: successful localization during focal seizure. Epilepsy Res. 2012;101(1-2):191-6. doi: 10.1016/j.eplepsyres.2012.03.014. PubMed PMID: 22503605; PMCID: PMC3621737.
  32. Kakisaka Y, Iwasaki M, Alexopoulos AV, Enatsu R, Jin K, Wang ZI, Mosher JC, Dubarry AS, Nair DR, Burgess RC. Magnetoencephalography in fronto-parietal opercular epilepsy. Epilepsy Res. 2012;102(1-2):71-7. doi: 10.1016/j.eplepsyres.2012.05.003. PubMed PMID: 22658720; PMCID: PMC3645283.

Conference Papers

  1. Joshi AA, Salloum R, Bhushan C, Leahy RM. Measuring Asymmetric Interactions in Resting State Brain Networks. Inf Process Med Imaging. 2015;24:399-410. PubMed PMID: 26221690; PMCID: PMC4519983.
  2. Chambers MC, Bhushan C, Haldar JP, Leahy RM, Shattuck DW. Correcting Inhomogeneity-Induced Distortion in Fmri Using Non-Rigid Registration. Proc IEEE Int Symp Biomed Imaging. 2015;2015:1364-7. doi: 10.1109/ISBI.2015.7164129. PubMed PMID: 26617955; PMCID: PMC4662423.
  3. Joshi AA AS, Shattuck DW, Damasio H, Leahy RM Cortical Shape Analysis using the Anisotropic Global Point Signature. MFCA 2013: 4th MICCAI workshop on Mathematical Foundations of Computational Anatomy; September 2013; Nagoya, Japan 2013.
  4. Haldar JP, Leahy RM. The equivalence of linear spherical deconvolution and model-free linear transform methods for diffusion MRI. Biomedical Imaging (ISBI), 2013 IEEE 10th International Symposium on; 2013 7-11 April 2013.
  5. Wheland D, Joshi A, McMahon K, Hansell N, Martin N, Wright M, Thompson P, Shattuck D, Leahy R. Robust identification of partial-correlation based networks with applications to cortical thickness data. Biomedical Imaging (ISBI), 2012 9th IEEE International Symposium on; 2012 2-5 May 2012.
  6. Somayajula S, Joshi AA, Leahy RM. Non-rigid Image Registration Using Gaussian Mixture Models. In: Dawant B, Christensen G, Fitzpatrick JM, Rueckert D. Biomedical Image Registration: Springer Berlin Heidelberg; 2012. p. 286-95.
  7. Joshi AA, Shattuck DW, Leahy RM. A Method for Automated Cortical Surface Registration and Labeling. Biomed Image Regist Proc. 2012;7359:180-9. doi: 10.1007/978-3-642-31340-0_19. PubMed PMID: 26213720; PMCID: PMC4511281.
  8. Joshi AA, Shattuck DW, Damasio H, Leahy RM. Geodesic curvature flow on surfaces for automatic sulcal delineation. Biomedical Imaging (ISBI), 2012 9th IEEE International Symposium on; 2012 2-5 May 2012.
  9. Joshi AA, Ashrafulla S, Shattuck DW, Damasio H, Leahy RM. An invariant shape representation using the anisotropic Helmholtz equation. Med Image Comput Comput Assist Interv. 2012;15(Pt 3):607-14. PubMed PMID: 23286181; PMCID: PMC3632444.
  10. Haldar JP, Leahy RM. New linear transforms for data on a Fourier 2-sphere with application to diffusion MRI. Biomedical Imaging (ISBI), 2012 9th IEEE International Symposium on; 2012 2-5 May 2012.
  11. Bhushan C, Haldar JP, Joshi AA, Leahy RM. Correcting susceptibility-induced distortion in diffusion-weighted MRI using constrained nonrigid registration. Signal & Information Processing Association Annual Summit and Conference (APSIPA ASC), 2012 Asia-Pacific; 2012 3-6 Dec. 2012.

Abstracts

  1. Deblieck C, Christov-Moore L, Wu AD, Shattuck D, Iacoboni M. Diffusion MRI Parameters Mediating the Behavioral Effects Of TMS, Non Invasive Brain stimulation technics (NIBS) for psychiatric disorders: First European Meeting. Ghent, Belgium, Dec 2015.
  2. Wang ZI, Krishnan B, Al-Sharif N, Shattuck D, Joshi A, Leahy R, Alexopoulos A, Burgess R, Mosher J, Udayasankar U, Moosa AN, Wyllie E, Jones S. Automated MRI Volumetric Analysis Of Rasmussen’s Encephalitis. 69th Annual Meeting of the American Epilepsy Society, Philadelphia, PA, Dec 2015.
  3. Kim B, Kay DB, Yi Y, Lee D, Chaudhry Y, Haldar JP, Leahy RM, Winstein CJ. DTI analysis of corticospinal tract using BrainSuite: A potential biomarker of upper extremity therapeutic response to neurorehabilitation in chronic stroke. Society for Neuroscience (SfN) 2014 Annual Meeting. Washington D.C. Nov 2014.
  4. Kim B, Oh Y, Leahy RM, Haldar JP, Schweighofer N, Winstein CJ. Brain sensorimotor structural network difference between two hemispheres in chronic stroke. Society for Neuroscience (SfN) 2015 Annual Conference. Chicago, IL. Oct 2015.
  5. Kim B, Oh Y, Leahy RM, Haldar JP, Schweighofer N, Winstein CJ. Is structural connectivity of basal ganglia associated with learned non-use in chronic stroke? American Society for Neurorehabilitation (ASNR) 2015 annual meeting. Chicago, IL. Oct 2015.
  6. Varadarajan D, Wang ZI, Joshi AA, Shattuck DW, Jones SE, Leahy RM. Detecting Focal Cortical Dysplasia using Population-Based Models of Cortical Thickness. 21st Annual Meeting of the Organization for Human Brain Mapping Honolulu, Hawaii, June 2015.
  7. Chong M, Joshi AA, Haldar JP, DuPre E, Luh W-M, Shattuck DW, Spreng RN, Leahy RM. A Group Approach to Functional Cortical Parcellation from Resting-State fMRI. 21st Annual Meeting of the Organization for Human Brain Mapping Honolulu, Hawaii, June 2015.
  8. Phillips O, Joshi S, Piras F, Orfei M, Iorio M, Narr K, Shattuck D, Caltagirone C, Gianfranco Spalletta3, Margherita Di Paola. Is the Superficial White Matter important in Alzheimer’s Disease? 21st Annual Meeting of the Organization for Human Brain Mapping Honolulu, Hawaii, June 2015.
  9. Jones S, Wang I, Alexopoulos A, Al-Sharif N, Burgess R, Joshi A, Krishnan B, Leahy R, Mosher J, Udayasankar U, Shattuck D. Automated Quantitative Assessment of Rasmussen’s Encephalitis. American Society of Neuroradiology 53rd Annual Meeting, Chicago, IL, April 2015.
  10. Chambers M, Bhushan C, Pirnia T, Narr K, Haldar J, Leahy R, Shattuck D. Registration-Based Distortion and Intensity Correction in fMRI. 20th Annual Meeting of the Organization for Human Brain Mapping Hamburg, Germany, June 2014.
  11. Joshi S, Woods, R, Joshi A, Fears S, Al-Sharif N, Leahy R, Shattuck D. A Statistical Toolbox for BrainSuite 20th Annual Meeting of the Organization for Human Brain Mapping Hamburg, Germany, June 2014.
  12. Joshi A, Bhushan C, Shattuck D, Leahy R. Estimation of cortical thickness from T1-weighted MRI images using tissue fractions. 20th Annual Meeting of the Organization for Human Brain Mapping, Hamburg, Germany, June 2014.
  13. Balasubramaniam E, Joshi A, Shattuck D, Leahy R. A PDE approach for automatic thickness estimation using partial volume classification. Joint Annual Meeting ISMRM-ESMRMB Milan, Italy, April 2014.
  14. Bhushan C, Haldar JP, Joshi AA, Shattuck DW, Leahy RM. INVERSION: A Robust Method for Co-registration of T1 and Diffusion Weighted MRI Images. Joint Annual Meeting ISMRM-ESMRMB, Milan, Italy, April 2014.
  15. J. P. Haldar. LORAKS: Low-Rank Modeling of Local k-Space Neighborhoods. Joint Annual Meeting ISMRM-ESMRMB, Milan, April 2014.
  16. D. Varadarajan, J. P. Haldar. A Novel Approach for Statistical Estimation of HARDI Diffusion Parameters from Rician and Non-Central Chi Magnitude Images. Joint Annual Meeting ISMRM-ESMRMB, Milan, April 2014.
  17. J. Zhuo, J. P. Haldar. P-LORAKS: Low-rank modeling of local k-space neighborhoods with parallel imaging data. Joint Annual Meeting ISMRM-ESMRMB, Milan, April 2014.
  18. Beroukhim D, Konersman M, Chong M, Joshi AA, Bhushan C, Shattuck DW, Haldar JP, Leahy RM, Winstein CJ. Effects of rehabilitation post-stroke: DTI analysis of corticospinal tract characteristics using BrainSuite13, 43rd International Meeting of the Society for Neuroscience San Diego, CA, November 2013.
  19. Shattuck D Joshi A, Haldar J, Bhushan C, Choi S, Krause A, Wisnowski J, Damasio H, Toga A, Leahy R. New BrainSuite13 Tools for Image Segmentation, Registration Connectivity Analysis and Visualization, 19th Annual Meeting of the Organization for Human Brain Mapping, Seattle, WA, June 2013.
  20. Joshi A, Ashrafulla S, Shattuck D, Damasio H, Leahy R. Automated Analysis of the Shape of Sulcal Curves using the Anisotropic Helmholtz Equation, 19th Annual Meeting of the Organization for Human Brain Mapping, Seattle, WA, June 2013.
  21. Choi S, Bhushan C, Joshi AA, Raphel K, Tranel D, Shattuck D, Haldar J, Leahy RM, Damasio H, Wisnowski J. Altered orbitofrontal tissue microstructure in patients with chronic anterior temporal lobe lesions, 19th Annual Meeting of the Organization for Human Brain Mapping, Seattle, WA, June 2013.
  22. Shattuck DW Joshi AA, Haldar JP, Bhushon C, Krause AC, Wisnowski JL, Toga AW, Leahy RM. Software Tools for Anatomical ROI-based Connectivity Analysis, International Society for Magnetic Resonance in Medicine 21st Scientific Meeting, Salt Lake City, Utah, April 2013.
  23. Haldar JP, Shattuck DW Leahy RM. Estimation of White Matter Fiber Orientations with the Funk-Radon and Cosine Transform, International Society for Magnetic Resonance in Medicine 21st Scientific Meeting, Salt Lake City, Utah, April 2013.
  24. Bhushan C, Joshi AA, Leahy RM, Haldar JP. Accelerating Data Acquisition for Reversed-Gradient Distortion Correction in Diffusion MRI: A Constrained Reconstruction Approach. International Society for Magnetic Resonance in Medicine 21st Scientific Meeting, Salt Lake City, April 2013.
  25. Choi S, Joshi AA, Bhushan C, Shattuck DW Leahy RM, Damasio H, Panigrahy A, Wisnowski JL. A Multimodal Investigation of Neuronal/Axonal Integrity Using Structural T1-weighted Imaging, Diffusion Tensor Imaging, and H1 MR Spectroscopy, International Society for Magnetic Resonance in Medicine 21st Scientific Meeting, Salt Lake City, Utah, April 2013.
  26. Haldar JP, Shattuck DW, Damasio H, Leahy RM. Improved Diffusion Tractography with the Funk-Radon and Cosine Transform, 18th Annual Meeting of the Organization for Human Brain Mapping, Beijing, China, June 2012.
  27. Joshi AA, Shattuck DW, Leahy RM. Refinement of Automated Cortical Surface Registration and Labelling using Gradient Curvature Flow, 18th Annual Meeting of the Organization for Human Brain Mapping, Beijing, China, June 2012.

Related work

We have published several earlier papers describing and validating many of the methods included within the BrainSuite tools. These include:

Methods papers

  1. Joshi AA, Pantazis D, Li Q, Damasio H, Shattuck D, Toga A, Leahy RM (2010) Sulcal set optimization for cortical surface registration, NeuroImage 50(3):950-9
  2. Pantazis D, Joshi AA, Jintao J, Shattuck DW, Bernstein LE, Damasio H, and Leahy RM (2010) Comparison of landmark-based and automatic methods for cortical surface registration, NeuroImage49(3):2479-93
  3. Joshi AA, Shattuck DW, Thompson PM, and Leahy RM (2010) A Parameterization-based Numerical Method for Isotropic and Anisotropic Diffusion Smoothing on Non-Flat Surfaces, IEEE Trans. on Image Processing 18(6):1358-1365.
  4. Joshi AA, Shattuck DW, Thompson PM, and Richard M. Leahy (2007) Surface-Constrained Volumetric Brain Registration Using Harmonic Mappings IEEE Trans. on Medical Imaging 26(12):1657-1669
  5. Dogdas B, Shattuck DW, and Leahy RM (2005) Segmentation of Skull and Scalp in 3D Human MRI Using Mathematical Morphology Human Brain Mapping26(4):273-85
  6. Shattuck DW and Leahy RM (2002) BrainSuite: An Automated Cortical Surface Identification Tool Medical Image Analysis, 8(2):129-142.
  7. Shattuck DW and Leahy RM (2001) Graph Based Analysis and Correction of Cortical Volume Topology, IEEE Transactions on Medical Imaging, 20(11)1167-1177.
  8. Shattuck DW, Sandor-Leahy SR, Schaper KA, Rottenberg DA, and Leahy RM, “Magnetic Resonance Image Tissue Classification Using a Partial Volume Model,” NeuroImage, 13(5):856-876.

Validation Studies

  1. Fennema-Notestine C, Ozyurt IB, Clark CP, Morris S, Bischoff-Grethe A, Bondi MW, Jernigan TL, Fischl B, Segonne F, Shattuck DW, Leahy RM, Rex DE, Toga AW, Zou KH, the Morphometry BIRN, and Brown GG (2006) Quantitative Evaluation of Automated Skull-Stripping Methods Applied to Contemporary and Legacy Images: Effects of Diagnosis, Bias Correction, and Slice Location Human Brain Mapping 27(2):99-113PMCID: PMC2757616
  2. Arnold JB, Liow J-S, Schaper KA, Stern JJ, Sled JG, Shattuck DW, Worth AJ, Cohen MS, Leahy RM, Mazziotta JC, and Rottenberg DA (2001) Qualitative and Quantitative Evaluation of Six Bias-Correction Algorithms NeuroImage, 5(13):931-943.