Package diffusion data for reproducible statistical analysis.

Package diffusion data for reproducible statistical analysis.

copy_dba_data(
  subjdir = "",
  csv = "",
  measure = "FA",
  atlas = "",
  eddy = TRUE,
  smooth = 0,
  outdir,
  exclude_col = ""
)

Arguments

subjdir

subject directory containing BrainSuite processed data.

csv

filename of a comma separated (csv) file containing the subject demographic information. The first column of this csv file should be "subjID" and should have subject identifiers you wish to analyze. subjID can be alphanumeric and should be exactly equal to the individual subject directory name.

measure

character specifying the brain imaging measure. If analyzing diffusion data, should be "FA".

atlas

path name to the atlas

eddy

boolean for specifying if the diffusion images were eddy-current corrected or not.

smooth

numeric value denoting the smoothing level.

outdir

output directory that will contain the copied data

exclude_col

character string for the column in demographics csv (contains 1 or 0 for each row) specifying the subjects to exclude. 1 denotes include, 0 denotes exclude.