14. Data and Code Availability

• The BrainSuite BIDS App code is open-source and freely available from https://github.com/bids-apps/BrainSuite.

• A pre-built Docker image containing the BrainSuite BIDS App is freely available from https://hub.docker.com/r/bids/brainsuite.

• A pre-built Singularity version of the BrainSuite BIDS App is freely available for download at https://brainsuite.org/data/sif/bids_brainsuite_v23a.simg.

• A tutorial on how to use the BrainSuite BIDS App to process a small set of data is available at https://github.com/BrainSuite/BrainSuiteBIDSAppSampleData.

• The dataset used for the BrainSuite BIDS App bioRxiv preprint are available on OpenNeuro (AOMIC-PIOP1 v2.0.0 and AOMIC-PIOP2 v2.0.0).

• All additional files and instructions necessary to process the AOMIC data and reproduce the analyses performed in the BrainSuite BIDS App bioRxiv preprint are available at https://github.com/BrainSuite/BrainSuiteBIDSAppPaperData and https://brainsuite.org/BIDS/paper.

• This manual for the BrainSuite BIDS App is available online at https://brainsuite.org/BIDS/.