Joshi AA, Choi S, Chong M, Sonkar G, Gonzalez-Martinez J, Nair D, Wisnowski JL, Haldar JP, Shattuck DW, Damasio H, Leahy RM (2022) A Hybrid High-Resolution Anatomical MRI Atlas with Sub-parcellation of Cortical Gyri using Resting fMRI Journal of Neuroscience Methods 374:109566.
Shattuck DW and Leahy RM (2002) BrainSuite: An Automated Cortical Surface Identification Tool Medical Image Analysis, 8(2):129-142.
Shattuck DW and Leahy RM (2001) Graph Based Analysis and Correction of Cortical Volume Topology, IEEE Transactions on Medical Imaging, 20(11)1167-1177.
Shattuck DW, Sandor-Leahy SR, Schaper KA, Rottenberg DA, and Leahy RM (2001) Magnetic Resonance Image Tissue Classification Using a Partial Volume Model NeuroImage 13(5):856-876.
Kim Y, Wong J, Shattuck D (2018) BrainSuite BIDS-App: a Containerized Version of the BrainSuite Processing Pipelines. 23rd Annual Meeting of the Organization for Human Brain Mapping Singapore, June 2018.
Kim Y, Joshi AA, Choi S, Joshi SH, Bhushan C, Varadarajan D, Haldar JP, Leahy RM, Shattuck DW (2023) The BrainSuite BIDS-App. 29th Annual Meeting of the Organization for Human Brain Mapping, Montreal, July 2023.
Kim Y, Joshi AA, Choi S, Joshi SH, Bhushan C, Varadarajan D, Haldar JP, Leahy RM, Shattuck DW (2023) BrainSuite BIDS App: Containerized Workflows for MRI Analysis. bioRxiv 2023.03.14.532686; doi: 10.1101/2023.03.14.532686
Bhushan C, Haldar JP, Choi S, Joshi AA, Shattuck DW, and Leahy RM (2015) Co-registration and Distortion Correction of Diffusion and Anatomical Images Based on Inverse Contrast Normalization. NeuroImage 115:269-80
Pantazis D, Joshi AA, Jintao J, Shattuck DW, Bernstein LE, Damasio H, and Leahy RM (2010) Comparison of landmark-based and automatic methods for cortical surface registration. NeuroImage 49(3):2479-93.
Joshi AA, Shattuck DW, Thompson PM, and Richard M. Leahy (2007) Surface-Constrained Volumetric Brain Registration Using Harmonic Mappings IEEE Trans. on Medical Imaging 26(12):1657-1669
Joshi S, Kim Y, Schroeder K, Joshi A, Leahy R, Shattuck DW (2020) The BrainSuite Statistics Toolbox in R (bssr), 26th Annual Meeting of the Organization for Human Brain Mapping, Montreal, Canada.
Joshi S, Kim Y, Schroeder K, Joshi A, Leahy R, Shattuck DW (2023) MRI Volumetric and Surface Data Analysis with the BrainSuite Statistics in R (bstr) Toolbox, 29th Annual Meeting of the Organization for Human Brain Mapping, Montreal, July 2023.
Joshi A, McCoy D, Chong M, Li J, Choi S, Shattuck D, Leahy R (2018) BFP: BrainSuite fMRI Pipeline. 23rd Annual Meeting of the Organization for Human Brain Mapping Singapore, June 2018.
Joshi AA, Bhushan C, Salloum R, Wisnowski JL, Shattuck DW, Leahy RM (2018) Using the Anisotropic Laplace Equation to Compute Cortical Thickness. Medical Image Computing and Computer Assisted Intervention (MICCAI) 2018, Granada, Spain September 2018.
Akrami H, Joshi AA, Li J, Leahy RM (2019) Group-wise alignment of resting fMRI in space and time. Medical Imaging 2019: Image Processing (pp. 737-744). International Society for Optics and Photonics SPIE volume 10949.
Li, J, Choi, S, Joshi, AA, Wisnowski, JL, Leahy, RM (2018) Global PDF-based temporal non-local means filtering reveals individual differences in brain connectivity. In 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018) (pp. 15-19).