uscworkshop2015

9.00-10:00am: Set-up
Come early if you need help setting up Brainsuite on your laptop

10:00-10:15am: Brainsuite overview
Introduction_Leahy

10:15-11:15am: Brainsuite GUI: surface extraction and visualization
Part1_shattuck_brainsuite_USC2015
Overview
Cortical surface extraction, interactive refinement and parameter selection.
Visualization of volume and surface data

11:15-12:00pm: Atlases, surface and volume labeling
Part2a_Joshi_SVReg_SurfaceVolume_registration_labeling
Part2b_Choi_SVReg_workshop_hands_on
Overview
The BCI-DNI atlas and creating your own atlases
Running Svreg – surface and volume labelling
Output files and their uses

12:00-1:00pm: Lunch break & invidual exploration of test data with Brainsuite

1:00-2:00pm: Processing diffusion data
Part3a_Bhushan_Processing_diffusion_data
Part3b_Bhushan_BDP_workshop_hands_on
Alignment and distortion-correction of diffusion images with BDP
Computing tensors and ODFs with BDP
Generation and visualization of fiber tracks in Brainsuite
ROI-based connectivity analysis with Brainsuite using standard and custom atlases
2.00-2.30pm: Hands on exploration of diffusion data

2.30-3.30pm: Batch processing and group statistical analysis
Part4a_shattuck_brainsuite_USC2015_batch_processing
Part4b_S_Joshi_Statistical_Analysis
Command line and batch processing with Brainsuite
Group analysis: available statistical models and their uses
Sample data and exercises: surface-based morphometry, ROI-based stats, tensor-based morphometry

3.30pm-4.30pm: Hands on exploration of statistical analysis package